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Home Chemspace Publications

Publications


  1. 1. Expanding Chemical Space of N-Acyl Sulfonamides for Carbonic Anhydrase Inhibitor Discovery

    Oleksii V. Gavrylenko, Bohdan V. Vashchenko, Vasyl Naumchyk, Oleksii Chuk, Olga Kuchuk, Alla Pogribna, Anzhelika I. Konovets, Volodymyr S. Brovarets, Sergey A. Zozulya, Dmytro S. Radchenko, Oleksandr O. Grygorenko, Yurii S. Moroz

    European Journal of Medicinal Chemistry 2025, doi: 10.1016/j.ejmech.2025.118296
    10.1016j_ejmech_2025_118296.jpg
    10.1016j_ejmech_2025_118296.jpg
  2. 2. Freedom Space 3.0: ML-Assisted Selection of Synthetically Accessible Small Molecules

    Anna Kapeliukha, Serhii Hlotov, Mykola Protopopov, Igor Dzyuba, Maryna Vasylchuk, Dmitriy M. Panov, Olga O. Tarkhanova, Yurii S. Moroz

    Journal of Chemical Information and Modeling 2025, doi: 10.1021/acs.jcim.5c01912
    10.1021_acs.jcim.5c01912.jpeg
    10.1021_acs.jcim.5c01912.jpeg
  3. 3. CACHE Challenge #2: Targeting the RNA Site of the SARS-CoV-2 Helicase Nsp13

    Oleksandra Herasymenko, Madhushika Silva, Abd Al-Aziz A. Abu-Saleh, Ayaz Ahmad, Jesus Alvarado-Huayhuaz, Oscar E. A. Arce, Roly J. Armstrong, Cheryl Arrowsmith, Kelly E. Bachta, Hartmut Beck, Denes Berta, Mateusz K. Bieniek, Vincent Blay, Albina Bolotokova, Philip E. Bourne, Marko Breznik, Peter J. Brown, Aaron D. G. Campbell, Emanuele Carosati, Irene Chau, Daniel J. Cole, Ben Cree, Wim Dehaen, Katrin Denzinger, Karina dos Santos Machado, Ian Dunn, Prasannavenkatesh Durai, Kristina Edfeldt, Aled Edwards, Darren Fayne, Daniel Felfoldi, Kallie Friston, Pegah Ghiabi, Elisa Gibson, Judith Günther, Anders Gunnarsson, Alexander Hillisch, Douglas R. Houston, Jan Halborg Jensen, Rachel J. Harding, Kate S. Harris, Laurent Hoffer, Anders Hogner, Joshua T. Horton, Scott Houliston, Judd F. Hultquist, Ashley Hutchinson, John J. Irwin, Marko Jukič, Shubhangi Kandwal, Andrea Karlova, Vittorio L. Katis, Ryan P. Kich, Dmitri Kireev, David Koes, Nicole L. Inniss, Uta Lessel, Sijie Liu, Peter Loppnau, Wei LuSam Martino, Miles McGibbon, Jens Meiler, Akhila Mettu, Sam Money-Kyrle, Rocco Moretti, Yurii S. Moroz, Charuvaka Muvva, Joseph A. Newman, Leon Obendorf, Brooks Paige, Amit Pandit, Keunwan Park, Sumera Perveen, Rachael Pirie, Gennady Poda, Mykola Protopopov, Vera Pütter, Federico Ricci, Natalie J. Roper, Edina Rosta, Margarita Rzhetskaya, Yogesh Sabnis, Karla J. F. Satchell, Frederico Schmitt Kremer, Thomas Scott, Almagul Seitova, Casper Steinmann, Valerij Talagayev, Olga O. Tarkhanova, Natalie J. Tatum, Dakota Treleaven, Adriano Velasque Werhli, W. Patrick Walters, Xiaowen WangJude Wells, Geoffrey Wells, Yvonne Westermaier, Gerhard Wolber, Lars Wortmann, Jixian Zhang, Zheng Zhao, Shuangjia Zheng, Matthieu Schapira

    Journal of Chemical Information and Modeling 2025, doi: 10.1021/acs.jcim.5c00535
    10.1021_acs.jcim.5c00535.jpg
    10.1021_acs.jcim.5c00535.jpg
  4. 4. Identification of novel Mycobacterium tuberculosis leucyl-tRNA synthetase inhibitors with antibacterial activity

    Galyna P. Volynets, Olga I. Gudzera, Segiy S. Lukashov, Oksana B. Gorbatiuk, Mariia O. Usenko, Tetiana P. Ruban, Mykola V. Protopopov, Segiy S. Tarnavskiy, Igor M. Kotey, Volodymyr G. Bdzhola, Andrii O. Prykhod’ko, Lubov L. Lukash, Sergiy M. Yarmoluk, Michael A. Tukalo

    Future Medicinal Chemistry 2025, doi: 10.1080/17568919.2025.2485673
    10.108017568919.2025.2485673.jpg
    10.108017568919.2025.2485673.jpg
  5. 5. In vitro evaluation of the immunogenic potential of gramicidin S and its photocontrolled analogues

    Kateryna Horbatok, Iryna Semchuk, Oleksandr Horbach, Natalia Khranovska, Viktoriia Kosach, Petro Borysko, Serhii Koniev, Anne S. Ulrich, Sergii Afonin, Igor V. Komarov

    RSC Medicinal Chemistry 2025, doi: 10.1039/D5MD00075K
    10.1039D5MD00075K.png
    10.1039D5MD00075K.png
  6. 6. MOSAEC-DB: a comprehensive database of experimental metal–organic frameworks with verified chemical accuracy suitable for molecular simulations

    Marco Gibaldi, Anna Kapeliukha, Andrew White, Jun Luo, Robert Alex Mayo, Jake Burner and Tom K. Woo

    Chemical Science 2025, doi: 10.1039/D4SC07438F
    10.1039d4sc07438f.png
    10.1039d4sc07438f.png
  7. 7. Incorporation of Ligand Charge and Metal Oxidation State Considerations into the Computational Solvent Removal and Activation of Experimental Crystal Structures Preceding Molecular Simulation

    Marco Gibaldi, Anna Kapeliukha, Andrew White, Tom K. Woo

    Journal of Chemical Information and Modeling 2024, doi: 10.1021/acs.jcim.4c01897
    10.1021acs.jcim.4c01897.png
    10.1021acs.jcim.4c01897.png
  8. 8. The freedom space – a new set of commercially available molecules for hit discovery

    Mykola V. Protopopov, Valentyna V. Tararina, Fanny Bonachera, Igor M.Dzyuba, Anna Kapeliukha, Serhii Hlotov, Oleksii Chuk, Gilles Marcou, Olga Klimchuk, Dragos Horvath, Erik Yeghyan, Olena Savych, Olga O. Tarkhanova, Alexandre Varnek, Yurii S. Moroz

    Molecular Informatics 2024, doi: 10.1002/minf.202400114
    10.1002minf.202400114.png
    10.1002minf.202400114.png
  9. 9. Development of a Potent and Selective G2A (GPR132) Agonist

    Victor Hernandez-Olmos, Jan Heering, Beatrice Marinescu, Tina Schermeng, Vladimir V. Ivanov, Yurii S. Moroz, Sheila Nevermann, Marius Mathes, Johanna H. M. Ehrler, Mohamad Wessam Alnouri, Markus Wolf, Alicia S. Haydo, Tessa Schmachtel, Andrea Zaliani, Georg Höfner, Astrid Kaiser, Manfred Schubert-Zsilavecz, Annette G. Beck-Sickinger, Stefan Offermanns, Philipp Gribbon, Michael A. Rieger, Daniel Merk, Marco Sisignano, Dieter Steinhilber, and Ewgenij Proschak

    Journal of Medicinal Chemistry 2024, doi: 10.1021/acs.jmedchem.3c02164
    10.1021acs.jmedchem.3c02164.png
    10.1021acs.jmedchem.3c02164.png
  10. 10. Structure-based discovery of CFTR potentiators and inhibitors

    Fangyu Liu, Anat Levit Kaplan, Jesper Levring, Jürgen Einsiedel, Stephanie Tiedt, Katharina Distler, Natalie S. Omattage, Ivan S. Kondratov,
    Yurii S. Moroz, Harlan L. Pietz, John J. Irwin, Peter Gmeiner, Brian K. Shoichet, Jue Chen

    10.1016j.cell.2024.04.046_2.jpg
    10.1016j.cell.2024.04.046_2.jpg
  11. 11. AlphaFold2 structures guide prospective ligand discovery

    Jiankun Lyu, Nicholas Kapolka, Ryan Gumpper, Assaf Alon, Liang Wang, Manish K. Jain, Ximena Barros-Álvarez, Kensuke Sakamoto, Yoojoong Kim, Jeffrey DiBerto,
    Kuglae Kim, Isabella S. Glenn, Tia A. Tummino, Sijie Huang, John J. Irwin, Olga O. Tarkhanova, Yurii Moroz, Georgios Skiniotis, Andrew C. Kruse, Brian K. Shoichet,
    Bryan L. Roth

    AlphaFold2_structures_guide_prospective_ligand_discovery_4.png
    AlphaFold2_structures_guide_prospective_ligand_discovery_4.png
  12. 12. Novel Fragment Inhibitors of PYCR1 from Docking-Guided X-ray Crystallography

    Kaylen R. Meeks, Juan Ji, Mykola V. Protopopov, Olga O. Tarkhanova, Yurii S. Moroz, and John J. Tanner

    Journal of Chemical Information and Modeling 2024, doi: 10.1021/acs.jcim.3c01879
    10.1021_acs.jcim_3c01879_3_4.png
    10.1021_acs.jcim_3c01879_3_4.png
  13. 13. Docking for EP4R antagonists active against inflammatory pain

    S. Gahbauer, C. DeLeon, J. M. Braz, V. Craik, H. J. Kang, X. Wan, X.-P. Huang, C. B. Billesbølle, Y. Liu, T. Che, I. Deshpande, M. Jewell, E. A. Fink, I. S. Kondratov, Y. S. Moroz, J. J. Irwin, A. I. Basbaum, B. L. Roth, B. K. Shoichet

    Nature Communications 2023, doi: 10.1038/s41467-023-43506-6
    10.1038@s41467-023-43506-6_Docking_for_EP4R_antagonists.jpg
    10.1038@s41467-023-43506-6_Docking_for_EP4R_antagonists.jpg
  14. 14. The challenge of balancing model sensitivity and robustness in predicting yields: a benchmarking study of amide coupling reactions

    Z. Liu, Y. S. Moroz, O. Isayev

    Chemical Science 2023, doi: 10.1039/D3SC03902A
    10.1039@D3SC03902A_ benchmarking_study_of_amide_coupling_reactions.gif
    10.1039@D3SC03902A_ benchmarking_study_of_amide_coupling_reactions.gif
  15. 15. AI-Powered Virtual Screening of Large Compound Libraries Leads to the Discovery of Novel Inhibitors of Sirtuin-1

    A. Gryniukova, F. Kaiser, I. Myziuk, D. Alieksieieva, C. Leberecht, P. P. Heym, O. O. Tarkhanova, Y. S. Moroz, P. Borysko, V. J. Haupt

    Journal of Medicinal Chemistry 2023, doi: 10.1021/acs.jmedchem.3c00128
    AI_Powered_Virtual_Screening_of_Large_Compound_Libraries.png
    AI_Powered_Virtual_Screening_of_Large_Compound_Libraries.png
  16. 16. Direct mapping of ligandable tyrosines and lysines in cells with chiral sulfonyl fluoride probes

    Y. Chen, G. B. Craven, R. A. Kamber, A. Cuesta, S. Zhersh, Y. S. Moroz, M. C. Bassik, J. Taunton

    Nature Chemistry 2023, doi: 10.1038/s41557-023-01281-3
    direct-mapping-of-ligandable-tyrosines-and-lysines_1.jpg
    direct-mapping-of-ligandable-tyrosines-and-lysines_1.jpg
  17. 17. Large library docking for novel SARS-CoV-2 main protease non-covalent and covalent inhibitors

    E. A. Fink, C. Bardine, S. Gahbauer, I. Singh, T. C. Detomasi, K. White, S. Gu, X. Wan, J. Chen, B. Ary, I. Glenn, J. O’Connell, H. O’Donnell, P. Fajtová, J. Lyu, S. Vigneron, N. J. Young, I. S. Kondratov, A. Alisoltani, L. M. Simons, R. Lorenzo‐Redondo, E. A. Ozer, J. F. Hultquist, A. J. O’Donoghue, Y. S. Moroz, J. Taunton, A. R. Renslo, J. J. Irwin, A. García‐Sastre, B. K. Shoichet, C. S. Craik

    Protein Science 2023, doi: 10.1002/pro.4712
    large_library_docking_for_novel_SARS-CoV-2_main_protease_inhibitors.jpg
    large_library_docking_for_novel_SARS-CoV-2_main_protease_inhibitors.jpg
  18. 18. Computer-Aided Design Of Muscarinic Acetylcholine Receptor M3 Inhibitors: Promising Compounds Among Trifluoromethyl Containing Hexahydropyrimidinones/Thiones

    A. Nyporko, O. Tsymbalyuk, I. Voiteshenko, S. Starosyla, M. Protopopov, V. Bdzhola

    Molecular Informatics 2023, doi: 10.1002/minf.202300006
    design-of-muscarinic-acetylcholine-receptor-m3-inhibitors_1.jpg
    design-of-muscarinic-acetylcholine-receptor-m3-inhibitors_1.jpg
  19. 19. Discovery, Synthesis, and In Vitro Characterization of 2,3 Derivatives of 4,5,6,7-Tetrahydro-Benzothiophene as Potent Modulators of Retinoic Acid Receptor-Related Orphan Receptor γt

    A. Fouda, S. Negi, O. Zaremba, R. S. Gaidar, Y. S. Moroz, E. Rusanov, S. Paraskevas, J. Tchervenkov

    Journal of Medicinal Chemistry 2023, doi: 10.1021/acs.jmedchem.3c00021
    potent_modulators_of_retinoic_acid_receptor-related_orphan_receptor_γt.png
    potent_modulators_of_retinoic_acid_receptor-related_orphan_receptor_γt.png
  20. 20. ZINC-22─A Free Multi-Billion-Scale Database of Tangible Compounds for Ligand Discovery

    B. I. Tingle, K. G. Tang, M. Castanon, J. J. Gutierrez, M. Khurelbaatar, C. Dandarchuluun, Y. S. Moroz, J. J. Irwin

    Journal of Chemical Information and Modeling 2023, doi: 10.1021/acs.jcim.2c01253
    zinc-22-multi-billion-database-tangible-compounds-for-ld.jpeg
    zinc-22-multi-billion-database-tangible-compounds-for-ld.jpeg
  21. 21. Iterative computational design and crystallographic screening identifies potent inhibitors targeting the Nsp3 macrodomain of SARS-CoV-2

    S. Gahbauer, G. J. Correy, M. Schuller, M. P. Ferla, Y. U. Doruk, M. Rachman, T. Wu, M. Diolaiti, S. Wang, R. J. Neitz, D. Fearon, D. S. Radchenko, Y. S. Moroz, J. J. Irwin, A. R. Renslo, J. C. Taylor, J. E. Gestwicki, F. von Delft, A. Ashworth, I. Ahel, B. K. Shoichet, J. S. Fraser

    Proceedings of the National Academy of Sciences (PNAS) 2023, doi: 10.1073/pnas.2212931120
    sb-discovery-sars-cov2-macrodomain-inhibitors.jpg
    sb-discovery-sars-cov2-macrodomain-inhibitors.jpg
  22. 22. Challenges for chemistry in Ukraine after the war: Ukrainian science requires rebuilding and support

    I. S. Kondratov, Y. S. Moroz, C. Gorgulla, O. O. Grygorenko, I. V. Komarov, G. Wagner, A. A. Tolmachev

    Proceedings of the National Academy of Sciences (PNAS) 2022, doi: 10.1073/pnas.2210686119
    challenges-for-chemistry-in-ukraine-after-the-war.jpg
    challenges-for-chemistry-in-ukraine-after-the-war.jpg
  23. 23. C−C Coupling through Nitrogen Deletion: Application to Library Synthesis

    S. Holovach, K. P. Melnykov, I. Poroshyn, R. T. Iminov, D. Dudenko, I. Kondratov, M. Levin, O. O. Grygorenko

    Chemistry A European Journal 2022, doi: 10.1002/chem.202203470
    c-c-coupling-nitrogen-deletion.png
    c-c-coupling-nitrogen-deletion.png
  24. 24. Advancing molecular graphs with descriptors for the prediction of chemical reaction yields

    D. Yarish, S. Garkot, O. O. Grygorenko, D. S. Radchenko, Y. S. Moroz, O. Gurbych

    Journal of Computational Chemistry 2022, doi: 10.1002/jcc.27016
    advancing-molecular-graphs-with-descriptors.jpg
    advancing-molecular-graphs-with-descriptors.jpg
  25. 25. Generative and reinforcement learning approaches for the automated de novo design of bioactive compounds

    M. Korshunova, N. Huang, S. Capuzzi, D. S. Radchenko, O. Savych, Y. S. Moroz, C. I. Wells, T. M. Willson, A. Tropsha, O. Isayev

    Communications Chemistry 2022, doi: 10.1038/s42004-022-00733-0
    generative-and-reinforcement-learning-approaches.jpg
    generative-and-reinforcement-learning-approaches.jpg
  26. 26. Magnet for the Needle in Haystack: “Crystal Structure First” Fragment Hits Unlock Active Chemical Matter Using Targeted Exploration of Vast Chemical Spaces

    J. Müller, R. Klein, O. Tarkhanova, A. Gryniukova, P. Borysko, S. Merkl, M. Ruf, A. Neumann, M. Gastreich, Y. S. Moroz, G. Klebe, S. Glinca

    Journal of Medicinal Chemistry 2022, doi: 10.1021/acs.jmedchem.2c00813
    magnet-for-the-needle-in-haystack.png
    magnet-for-the-needle-in-haystack.png
  27. 27. Structure-based discovery of nonopioid analgesics acting through the α2A-adrenergic receptor

    E. A. Fink, J. Xu, H. Hübner, J. M. Braz, P. Seemann, C. Avet, V. Craik, D. Weikert, M. F. Schmidt, C. M. Webb, N. A. Tolmachova, Y. S. Moroz, X.-P. Huang, C. Kalyanaraman, S. Gahbauer, G. Chen, Z. Liu, M. P. Jacobson, J. J. Irwin, M. Bouvier, Y. Du, B. K. Shoichet, A. I. Basbaum, P. Gmeiner

    discovery-of-nonopioid-analgesics-for-adrenergic-receptor.jpg
    discovery-of-nonopioid-analgesics-for-adrenergic-receptor.jpg
  28. 28. The Ukrainian Factor in Early-Stage Drug Discovery in the Context of Russian Invasion: The Case of Enamine Ltd

    I. S. Kondratov, Y. S. Moroz, O. O. Grygorenko, A. A. Tolmachev

    ACS Medicinal Chemistry Letters 2022, doi: 10.1021/acsmedchemlett.2c00211
    ukrainian-factor-in-early-stage-drug-discover.jpeg
    ukrainian-factor-in-early-stage-drug-discover.jpeg
  29. 29. Creation of targeted compound libraries based on 3D shape recognition

    A. Kyrylchuk, I. Kravets, A. Cherednichenko, V. Tararina, A. Kapeliukha, D. Dudenko, M. Protopopov

    Molecular Diversity 2022, doi: 10.1007/s11030-022-10447-z
    creation-of-targeted-compound-libraries.jpg
    creation-of-targeted-compound-libraries.jpg
  30. 30. In Vitro and In Silico Evaluation of Cholinesterase Inhibition by Alkaloids Obtained from Branches of Abuta panurensis Eichler

    R. da Silva Mesquita, A. Kyrylchuk, A. Cherednichenko, I. S. Costa Sá, L. Macedo Bastos, F. Moura Araújo da Silva, R. de C. Saraiva Nunomura, A. Grafov

    evaluation-of-cholinesterase-inhibition-by-alkaloids.png
    evaluation-of-cholinesterase-inhibition-by-alkaloids.png
  31. 31. Virtual Screening in Search for a Chemical Probe for Angiotensin-Converting Enzyme 2 (ACE2)

    I. O. Kravets, D. V. Dudenko, A. E. Pashenko, T. A. Borisova, G. M. Tolstanova, S. V. Ryabukhin, D. M. Volochnyuk

    virtual-screening-ace2.jpeg
    virtual-screening-ace2.jpeg
  32. 32. A Close-up Look at the Chemical Space of Commercially Available Building Blocks for Medicinal Chemistry

    Y. Zabolotna, D. M. Volochnyuk, S. V. Ryabukhin, D. Horvath, K. S. Gavrilenko, G. Marcou, Y. S. Moroz, O. Oksiuta, A. Varnek

    Journal of Chemical Information and Modeling 2021, doi: 10.1021/acs.jcim.1c00811
    close-up-look-at-the-chemical-space.jpeg
    close-up-look-at-the-chemical-space.jpeg
  33. 33. Synthon-based ligand discovery in virtual libraries of over 11 billion compounds

    A. A. Sadybekov, A. V. Sadybekov, Y. Liu, C. Iliopoulos-Tsoutsouvas, X.-P. Huang, J. Pickett, B. Houser, N. Patel, N. K. Tran, F. Tong, N. Zvonok, M. K. Jain, O. Savych, D. S. Radchenko, S. P. Nikas, N. A. Petasis, Y. S. Moroz, B. L. Roth, A. Makriyannis, V. Katritch

    synthon-based-ligand-discovery.jpeg
    synthon-based-ligand-discovery.jpeg
  34. 34. Structures of the σ2 receptor enable docking for bioactive ligand discovery

    A. Alon, J. Lyu, J. M. Braz, T. A. Tummino, V. Craik, M. J. O’Meara, C. M. Webb, D. S. Radchenko, Y. S. Moroz, X.-P. Huang, Y. Liu, B. L. Roth, J. J. Irwin, A. I. Basbaum, B. K. Shoichet, A. C. Kruse

    sigma2-receptor-docking.jpeg
    sigma2-receptor-docking.jpeg
  35. 35. SynthI: A New Open-Source Tool for Synthon-Based Library Design

    Y. Zabolotna, D. M. Volochnyuk, S. V. Ryabukhin, K. Gavrylenko, D. Horvath, O. Klimchuk, O. Oksiuta, G. Marcou, A. Varnek

    Journal of Chemical Information and Modeling 2021, doi: 10.1021/acs.jcim.1c00754
    SynthI-a-new-open-source-tool
    SynthI-a-new-open-source-tool
  36. 36. Scalable Approach to Fluorinated Heterocycles with Sulfur Tetrafluoride (SF4)

    S. Trofymchuk, M. Bugera, A. A. Klipkov, V. Ahunovych, B. Razhyk, S. Semenov, A. Boretskyi, K. Tarasenko, P. K. Mykhailiuk

    The Journal of Organic Chemistry 2021, doi: 10.1021/acs.joc.1c01518
    Fluorinated-heterocycles-with-SF4
    Fluorinated-heterocycles-with-SF4
  37. 37. One-pot parallel synthesis of 1,3,5-trisubstituted 1,2,4-triazoles

    D. S. Radchenko, V. S. Naumchyk, I. Dziuba, A. A. Kyrylchuk, K. E. Gubina, Y. S. Moroz, O. O. Grygorenko

    Molecular Diversity 2021, doi: 10.1007/s11030-021-10218-2
    triazoles-parallel-synthesis
    triazoles-parallel-synthesis
  38. 38. Synthesis of α-substituted 2-(1H-1,2,4-triazol-3-yl)acetates and 5-amino-2,4-dihydro-3H-pyrazol-3-ones via the Pinner strategy

    D. M. Khomenko, R. O. Doroshchuk, H. V. Ivanova, B. V. Zakharchenko, I. V. Raspertova, O. V. Vaschenko, S. Shova, A. V. Dobrydnev, Y. S. Moroz, O. O. Grygorenko, R. D. Lampeka

    Tetrahedron Letters 2021, doi: 10.1016/j.tetlet.2021.152956
    Pinner-strategy-for-pyrazolones
    Pinner-strategy-for-pyrazolones
  39. 39. A multi-pronged approach targeting SARS-CoV-2 proteins using ultra-large virtual screening

    C. Gorgulla, K. M. Padmanabha Das, K. E. Leigh, M. Cespugli, P. D. Fischer, Z.-F. Wang, G. Tesseyre, S. Pandita, A. Shnapir, A. Calderaio, M. Gechev, A. Rose, N. Lewis, C. Hutcheson, E. Yaffe, R. Luxenburg, H. D. Herce, V. Durmaz, T. D. Halazonetis, K. Fackeldey, J. J. Patten, A. Chuprina, I. Dziuba, A. Plekhova, Y. Moroz, D. Radchenko, O. Tarkhanova, I. Yavnyuk, C. Gruber, R. Yust, D. Payne, A. M. Näär, M. N. Namchuk, R. A. Davey, G. Wagner, J. Kinney, H. Arthanari

    ULVS-against-SARS-CoV-2-proteins
    ULVS-against-SARS-CoV-2-proteins
  40. 40. Generating Multibillion Chemical Space of Readily Accessible Screening Compounds

    O. O. Grygorenko, D. S. Radchenko, I. Dziuba, A. Chuprina, K. E. Gubina, Y. S. Moroz

    Generating-of-REAL-cmpds
    Generating-of-REAL-cmpds
  41. 41. SAVI, in silico generation of billions of easily synthesizable compounds through expert-system type rules

    H. Patel, W.-D. Ihlenfeldt, P. N. Judson, Y. S. Moroz, Y. Pevzner, M. L. Peach, V. Delannée, N. I. Tarasova, M. C. Nicklaus

    Scientific Data 2020, doi: 10.1038/s41597-020-00727-4
    SAVI-generation-billions-cmpds
    SAVI-generation-billions-cmpds
  42. 42. ZINC20—A Free Ultralarge-Scale Chemical Database for Ligand Discovery

    J. J. Irwin, K. G. Tang, J. Young, C. Dandarchuluun, B. R. Wong, M. Khurelbaatar, Y. S. Moroz, J. Mayfield, R. A. Sayle

    Journal of Chemical Information and Modeling 2020, doi: 10.1021/acs.jcim.0c00675
    ZINC20-for-ligand-discovery
    ZINC20-for-ligand-discovery
  43. 43. Atomic ring invariant and Modified CANON extended connectivity algorithm for symmetry perception in molecular graphs and rigorous canonicalization of SMILES

    D. G. Krotko

    Journal of Cheminformatics 2020, doi: 10.1186/s13321-020-00453-4
  44. 44. Synthesis, biological evaluation, and modeling studies of 1,3-disubstituted cyclobutane-containing analogs of combretastatin A4

    A. Malashchuk, A. V. Chernykh, V. V. Hurmach, M. O. Platonov, O. Onopchenko, S. Zozulya, C. G. Daniliuc, A. V. Dobrydnev, I. S. Kondratov, Y. S. Moroz, O. O. Grygorenko

    Journal of Molecular Structure 2020, doi: 10.1016/j.molstruc.2020.128025
    analogs-of-combretastatin-synth
    analogs-of-combretastatin-synth
  45. 45. Multigram Synthesis of Advanced 6,6-Difluorospiro[3.3]heptane-Derived Building Blocks

    S. Olifir, A. V. Chernykh, A. V. Dobrydnev, O. O. Grygorenko, Y. S. Moroz, Z. V. Voitenko, D. S. Radchenko

    European Journal of Organic Chemistry 2020, doi: 10.1002/ejoc.202000432
    Difluorospiroheptane-BBs
    Difluorospiroheptane-BBs
  46. 46. Synthesis of Spirocyclic β‐ and γ‐Sultams by One‐Pot Reductive Cyclization of Cyanoalkylsulfonyl Fluorides

    K. O. Stepannikova, B. V. Vashchenko, O. O. Grygorenko, M. V. Gorichko, A. Y. Cherepakha, Y. S. Moroz, Y. M. Volovenko, S. Zhersh

    European Journal of Organic Chemistry 2020, doi: 10.1002/ejoc.202000351
    Cyanoalkylsulfonyl-fluorides-synth
    Cyanoalkylsulfonyl-fluorides-synth
  47. 47. An open-source drug discovery platform enables ultra-large virtual screens

    C. Gorgulla, A. Boeszoermenyi, Z.-F. Wang, P. D. Fischer, P. W. Coote, K. M. Padmanabha Das, Y. S. Malets, D. S. Radchenko, Y. S. Moroz, D. A. Scott, K. Fackeldey, M. Hoffmann, I. Iavniuk, G. Wagner, H. Arthanari

    ULVS-open-source-platform
    ULVS-open-source-platform
  48. 48. Virtual discovery of melatonin receptor ligands to modulate circadian rhythms

    R. M. Stein, H. J. Kang, J. D. McCorvy, G. C. Glatfelter, A. J. Jones, T. Che, S. Slocum, X.-P. Huang, O. Savych, Y. S. Moroz, B. Stauch, L. C. Johansson, V. Cherezov, T. Kenakin, J. J. Irwin, B. K. Shoichet, B. L. Roth, M. L. Dubocovich

    virtual-discovery-of-MR-ligands
    virtual-discovery-of-MR-ligands
  49. 49. Sulfonimidamides and Imidosulfuric Diamides: Compounds from an Underexplored Part of Biologically Relevant Chemical Space

    S. V. Zasukha, V. M. Timoshenko, A. A. Tolmachev, V. O. Pivnytska, O. Gavrylenko, S. Zhersh, Y. Shermolovich, O. O. Grygorenko

    Chemistry – A European Journal 2020, doi: 10.1002/chem.201901179
    Sulfonimidamides-and-imidosulfuric-diamides
    Sulfonimidamides-and-imidosulfuric-diamides
  50. 50. (Het)aryl Difluoromethyl-Substituted β-Alkoxyenones: Synthesis and Heterocyclizations

    Y. Bugera, K. V. Tarasenko, I. S. Kondratov, I. I. Gerus, B. V. Vashchenko, V. E. Ivasyshyn, O. O. Grygorenko

    European Journal of Organic Chemistry 2019, doi: 10.1002/ejoc.201901833
    Synthesis-of-b-alkoxyenones
    Synthesis-of-b-alkoxyenones
  51. 51. Regioselective Synthesis of Functionalized 3- or 5-Fluoroalkyl Isoxazoles and Pyrazoles from Fluoroalkyl Ynones and Binucleophiles

    B. A. Chalyk, A. Khutorianskyi, A. Lysenko, Y. Fil, Y. O. Kuchkovska, K. S. Gavrilenko, I. Bakanovych, Y. S. Moroz, A. O. Gorlova, O. O. Grygorenko

    The Journal of Organic Chemistry 2019, doi: 10.1021/acs.joc.9b02258
    Regiosel-synth-of-isoxazoles-and-pyrazoles
    Regiosel-synth-of-isoxazoles-and-pyrazoles
  52. 52. Synthesis of 5-(Fluoroalkyl)isoxazole Building Blocks by Regioselective Reactions of Functionalized Halogenoximes

    B. A. Chalyk, K. V. Hrebeniuk, Y. V. Fil, K. S. Gavrilenko, A. B. Rozhenko, B. V. Vashchenko, O. V. Borysov, A. V. Biitseva, P. S. Lebed, I. Bakanovych, Y. S. Moroz, O. O. Grygorenko

    The Journal of Organic Chemistry 2019, doi: 10.1021/acs.joc.9b02264
    isoxazole-BBs-synth
    isoxazole-BBs-synth
  53. 53. SAR by Space: Enriching Hit Sets from the Chemical Space

    F.-M. Klingler, M. Gastreich, O. Grygorenko, O. Savych, P. Borysko, A. Griniukova, K. Gubina, C. Lemmen, Y. Moroz

    SAR-by-Space
    SAR-by-Space
  54. 54. One-Pot Parallel Synthesis of 5-(Dialkylamino)tetrazoles

    O. Savych, Y. O. Kuchkovska, A. V. Bogolyubsky, A. I. Konovets, K. E. Gubina, S. E. Pipko, A. V. Zhemera, A. V. Grishchenko, D. N. Khomenko, V. S. Brovarets, R. Doroschuk, Y. S. Moroz, O. O. Grygorenko

    ACS Combinatorial Science 2019, doi: 10.1021/acscombsci.9b00120
    Parallel-synthesis-of-tetrazoles
    Parallel-synthesis-of-tetrazoles
  55. 55. Pros and cons of virtual screening based on public ‘Big Data’: In silico mining for new bromodomain inhibitors

    I. Casciuc, D. Horvath, A. Gryniukova, K. A. Tolmachova, O. V. Vasylchenko, P. Borysko, Y. S. Moroz, J. Bajorath, A. Varnek

    European Journal of Medicinal Chemistry 2019, doi: 10.1016/j.ejmech.2019.01.010
    virtual-screening-on-public-Big-Data
    virtual-screening-on-public-Big-Data
  56. 56. Ultra-large library docking for discovering new chemotypes

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    Ultra-large-library-docking
    Ultra-large-library-docking
  57. 57. Evolution of commercially available compounds for HTS

    D. M. Volochnyuk, S. V. Ryabukhin, Y. S. Moroz, O. Savych, A. Chuprina, D. Horvath, Y. Zabolotna, A. Varnek, D. B. Judd

    Drug Discovery Today 2018, doi: 10.1016/j.drudis.2018.10.016
    compounds-for-HTS
    compounds-for-HTS
  58. 58. (Chlorosulfonyl)benzenesulfonyl Fluorides—Versatile Building Blocks for Combinatorial Chemistry: Design, Synthesis and Evaluation of a Covalent Inhibitor Library

    K. A. Tolmachova, Y. S. Moroz, A. Konovets, M. O. Platonov, O. V. Vasylchenko, P. Borysko, S. Zozulya, A. Gryniukova, A. V. Bogolubsky, S. Pipko, P. K. Mykhailiuk, V. S. Brovarets, O. O. Grygorenko

    ACS Combinatorial Science 2018, doi: 10.1021/acscombsci.8b00130
    benzenesulfonyl-fluorides-BBs-for-CC
    benzenesulfonyl-fluorides-BBs-for-CC
  59. 59. Facile One-Pot Parallel Synthesis of 3-Amino-1,2,4-triazoles

    A. V. Bogolyubsky, O. Savych, A. V. Zhemera, S. E. Pipko, A. V. Grishchenko, A. I. Konovets, R. O. Doroshchuk, D. N. Khomenko, V. S. Brovarets, Y. S. Moroz, M. Vybornyi

    ACS Combinatorial Science 2018, doi: 10.1021/acscombsci.8b00060
    Parallel-synth-of-Aminotriazoles
    Parallel-synth-of-Aminotriazoles
  60. 60. Saturated Heterocyclic Aminosulfonyl Fluorides: New Scaffolds for Protecting-Group-Free Synthesis of Sulfonamides

    S. A. Zhersh, O. P. Blahun, I. V. Sadkova, A. A. Tolmachev, Y. S. Moroz, P. K. Mykhailiuk

    Chemistry - A European Journal 2018, doi: 10.1002/chem.201801140
    heterocyclic-aminosulfonyl-F-scaffolds
    heterocyclic-aminosulfonyl-F-scaffolds